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    F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832336, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like/FBD-like domains-containing protein
    Primary source
    TAIR:AT5G22730
    Locus tag
    AT5G22730
    See related
    Araport:AT5G22730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDJ22.15; MDJ22_15
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (7551364..7553537, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene LOW protein: F-box/FBD/LRR-like protein Neighboring gene F-box/FBD/LRR protein Neighboring gene cellulose synthase-like A02 Neighboring gene DNA/RNA helicase protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343757.1
    NM_001343758.1
    NM_122179.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like/FBD-like domains-containing protein
    NP_197665.2
    • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22610.1); Has 2101 Blast hits to 2057 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7551364..7553537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122179.3 → NP_197665.2  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197665.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNI8
      UniProtKB/TrEMBL
      A0A5S9Y6A8
      Conserved Domains (4) summary
      smart00579
      Location:395 → 465
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:157 → 177
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:28 → 64
      F-box; F-box domain
      pfam07723
      Location:177 → 202
      LRR_2; Leucine Rich Repeat

    2. NM_001343757.1 → NP_001331118.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCB5, A0A1P8BCX4

    3. NM_001343758.1 → NP_001331119.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNI8
      UniProtKB/TrEMBL
      A0A5S9Y6A8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNI8.2

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