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    neuroblastoma-amplified sequence protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832505, updated on 18-Sep-2024

    Summary

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    Official Full Name
    neuroblastoma-amplified sequence protein
    Primary source
    TAIR:AT5G24350
    Locus tag
    AT5G24350
    See related
    Araport:AT5G24350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K16H17.4; K16H17_4; MAG2-interacting protein 2; MIP2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (8301105..8310895)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene TRITHORAX-RELATED PROTEIN 6 Neighboring gene 3'-5' exonuclease domain-containing protein Neighboring gene Serine/threonine-protein kinase WNK (With No Lysine)-like protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Misregulation of ER-Golgi Vesicle Transport Induces ER Stress and Affects Seed Vigor and Stress Response. Zhao X, et al. Front Plant Sci, 2018. PMID 29868102, Free PMC Article
    2. MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana. Li L, et al. Plant J, 2013 Dec. PMID 24118572
    3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MAG2 and the three MIP proteins (MIP1, MIP2, MIP3) form a unique complex on the ER that is responsible for efficient transport of seed storage proteins.
      Title: MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203451.1
    NM_001343876.1
    NM_122343.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within protein exit from endoplasmic reticulum IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein maturation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vacuolar protein processing TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuroblastoma-amplified sequence protein
    NP_001190380.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244).
    NP_001318636.1
    • CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8301105..8310895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343876.1 → NP_001318636.1  neuroblastoma-amplified sequence protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIN7
      UniProtKB/TrEMBL
      A0A5S9Y6S5

    2. NM_001203451.1 → NP_001190380.1  neuroblastoma-amplified sequence protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190380.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y6S5, F4KH34
      Conserved Domains (1) summary
      pfam08314
      Location:601 → 1126
      Sec39; Secretory pathway protein Sec39

    3. NM_122343.3 → NP_197823.1  neuroblastoma-amplified sequence protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197823.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIN7
      UniProtKB/TrEMBL
      A0A5S9Y6S5
      Conserved Domains (1) summary
      pfam08314
      Location:581 → 1106
      Sec39; Secretory pathway protein Sec39
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FIN7.1

    Gene LinkOut

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