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    CGLD27 DUF1230 family protein (DUF1230) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836872, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CGLD27
    Official Full Name
    DUF1230 family protein (DUF1230)
    Primary source
    TAIR:AT5G67370
    Locus tag
    AT5G67370
    See related
    Araport:AT5G67370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27; K8K14.9; K8K14_9
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    Genomic context

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    See CGLD27 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (26877272..26879639, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Subtilase family protein Neighboring gene ncRNA Neighboring gene casein kinase alpha 1 Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene glycosyltransferase-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The transcriptional response of Arabidopsis leaves to Fe deficiency. Rodríguez-Celma J, et al. Front Plant Sci, 2013. PMID 23888164, Free PMC Article
    2. Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage. Urzica EI, et al. Plant Cell, 2012 Oct. PMID 23043051, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126137.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to iron ion starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to iron ion starvation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DUF1230 family protein (DUF1230)
    NP_201538.1
    • Protein of unknown function (DUF1230); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1230 (InterPro:IPR009631); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1230) (TAIR:AT5G11840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26877272..26879639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126137.4 → NP_201538.1  DUF1230 family protein (DUF1230) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201538.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FN15
      UniProtKB/TrEMBL
      A0A5S9YJU1
      Conserved Domains (1) summary
      pfam06799
      Location:86 → 225
      DUF1230; Protein of unknown function (DUF1230)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FN15.1

    Gene LinkOut

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