U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    pleckstrin homology (PH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827424, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    pleckstrin homology (PH) domain-containing protein
    Primary source
    TAIR:AT4G17140
    Locus tag
    AT4G17140
    See related
    Araport:AT4G17140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4605C; FCAALL.362
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    68
    Sequence:
    Chromosome: 4; NC_003075.7 (9613330..9636873, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene poly(U)-specific endoribonuclease-B protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene RAB GTPase homolog B1A Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001160773.1
    NM_001203818.1
    NM_117818.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    pleckstrin homology (PH) domain-containing protein
    NP_001154245.1
    • pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2762 Blast hits to 1565 proteins in 213 species: Archae - 0; Bacteria - 36; Metazoa - 1081; Fungi - 437; Plants - 621; Viruses - 0; Other Eukaryotes - 587 (source: NCBI BLink).
    NP_001190747.1
    • pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Protein of unknown function DUF946 (InterPro:IPR009291), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1).
    NP_193447.5
    • pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2762 Blast hits to 1565 proteins in 213 species: Archae - 0; Bacteria - 36; Metazoa - 1081; Fungi - 437; Plants - 621; Viruses - 0; Other Eukaryotes - 587 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9613330..9636873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160773.1 → NP_001154245.1  pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154245.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FQA2, F4JNE3
      Conserved Domains (7) summary
      smart00233
      Location:804 → 902
      PH; Pleckstrin homology domain
      pfam00169
      Location:804 → 902
      PH; PH domain
      pfam06101
      Location:1977 → 2082
      DUF946; Plant protein of unknown function (DUF946)
      pfam09333
      Location:3706 → 3784
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 110
      Chorein_N; N-terminal region of Chorein or VPS13
      pfam16908
      Location:136 → 375
      VPS13; Vacuolar sorting-associated protein 13, N-terminal
      pfam16910
      Location:561 → 780
      VPS13_mid_rpt; Repeating coiled region of VPS13

    2. NM_117818.5 → NP_193447.5  pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193447.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FQA2, F4JNE4
      Conserved Domains (7) summary
      smart00233
      Location:804 → 902
      PH; Pleckstrin homology domain
      pfam00169
      Location:804 → 902
      PH; PH domain
      pfam06101
      Location:1987 → 2092
      DUF946; Plant protein of unknown function (DUF946)
      pfam09333
      Location:3704 → 3782
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 110
      Chorein_N; N-terminal region of Chorein or VPS13
      pfam16908
      Location:136 → 375
      VPS13; Vacuolar sorting-associated protein 13, N-terminal
      pfam16910
      Location:561 → 780
      VPS13_mid_rpt; Repeating coiled region of VPS13

    3. NM_001203818.1 → NP_001190747.1  pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190747.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XTL0, F4JNE2
      Conserved Domains (7) summary
      smart00233
      Location:804 → 909
      PH; Pleckstrin homology domain
      pfam00169
      Location:804 → 909
      PH; PH domain
      pfam06101
      Location:2013 → 2118
      DUF946; Plant protein of unknown function (DUF946)
      pfam09333
      Location:3707 → 3785
      ATG_C; Autophagy-related protein C terminal domain
      pfam12624
      Location:3 → 110
      Chorein_N; N-terminal region of Chorein or VPS13
      pfam16908
      Location:136 → 375
      VPS13; Vacuolar sorting-associated protein 13, N-terminal
      pfam16910
      Location:561 → 780
      VPS13_mid_rpt; Repeating coiled region of VPS13
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.