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    Dlx1as distal-less homeobox 1, antisense [ Mus musculus (house mouse) ]

    Gene ID: 111970, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Dlx1asprovided by MGI
    Official Full Name
    distal-less homeobox 1, antisenseprovided by MGI
    Primary source
    MGI:MGI:1195983
    See related
    Ensembl:ENSMUSG00000084946 AllianceGenome:MGI:1195983
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dix1as; Dlx1os
    Summary
    Acts upstream of or within embryonic cranial skeleton morphogenesis. Is expressed in several structures, including brain and branchial arch. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in whole brain E14.5 (RPKM 30.7), CNS E14 (RPKM 27.3) and 4 other tissues See more
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    Genomic context

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    See Dlx1as in Genome Data Viewer
    Location:
    2 C2; 2 42.58 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (71360982..71368235, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (71530638..71537891, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene histone aminotransferase 1 Neighboring gene VISTA enhancer mm55 Neighboring gene nuclear protein-NHP2-like protein pseudogene Neighboring gene methionyl aminopeptidase type 1D (mitochondrial) Neighboring gene STARR-seq mESC enhancer starr_04791 Neighboring gene STARR-seq mESC enhancer starr_04792 Neighboring gene distal-less homeobox 1 Neighboring gene STARR-seq mESC enhancer starr_04793 Neighboring gene distal-less homeobox 2 Neighboring gene STARR-positive B cell enhancer mm9_chr2:71436893-71437193 Neighboring gene predicted gene, 36857

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Long noncoding RNAs related to the odontogenic potential of dental mesenchymal cells in mice. Zheng Y, et al. Arch Oral Biol, 2016 Jul. PMID 26986487
    2. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. Ramos AD, et al. Cell Stem Cell, 2013 May 2. PMID 23583100, Free PMC Article
    3. Sequence, organization, and transcription of the Dlx-1 and Dlx-2 locus. McGuinness T, et al. Genomics, 1996 Aug 1. PMID 8812481
    4. Dlx genes encode DNA-binding proteins that are expressed in an overlapping and sequential pattern during basal ganglia differentiation. Liu JK, et al. Dev Dyn, 1997 Dec. PMID 9415433
    5. Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling. Cajigas I, et al. Development, 2015 Aug 1. PMID 26138476, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Other Names

    • Dlx1 antisense
    • distal-less homeobox 1, opposite strand

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryonic cranial skeleton morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002854.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK132348
      Related
      ENSMUST00000137251.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      71360982..71368235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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