U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    phospholipase-like protein (PEARLI 4) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830012, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    phospholipase-like protein (PEARLI 4) family protein
    Primary source
    TAIR:AT4G38550
    Locus tag
    AT4G38550
    See related
    Araport:AT4G38550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20M13.110; F20M13_110
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (18025635..18028911)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene phospholipase C1 Neighboring gene ncRNA Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene ncRNA Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene ncRNA Neighboring gene Putative CDP-diacylglycerol-inositol 3-phosphatidyltransferase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001342501.1
    NM_001342502.1
    NM_001342503.1
    NM_001342504.1
    NM_120016.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    phospholipase-like protein (PEARLI 4) family protein
    NP_195567.2
    • Arabidopsis phospholipase-like protein (PEARLI 4) family; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G20950.1); Has 2973 Blast hits to 2400 proteins in 345 species: Archae - 8; Bacteria - 147; Metazoa - 1113; Fungi - 821; Plants - 590; Viruses - 45; Other Eukaryotes - 249 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18025635..18028911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120016.6 → NP_195567.2  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195567.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FWP5, Q8W4I3, Q9C5F6
      Conserved Domains (2) summary
      PHA03247
      Location:22 → 241
      PHA03247; large tegument protein UL36; Provisional
      pfam05278
      Location:342 → 611
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    2. NM_001342502.1 → NP_001328679.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FWP5, Q8W4I3, Q9C5F6
      Conserved Domains (2) summary
      PHA03247
      Location:22 → 241
      PHA03247; large tegument protein UL36; Provisional
      pfam05278
      Location:342 → 611
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    3. NM_001342501.1 → NP_001328678.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5D8, Q9SZN4

    4. NM_001342503.1 → NP_001328676.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5D6, Q8W4I3

    5. NM_001342504.1 → NP_001328677.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5D2, Q8W4I3
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.