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    Atp5f1d ATP synthase F1 subunit delta [ Mus musculus (house mouse) ]

    Gene ID: 66043, updated on 9-Dec-2024

    Summary

    Official Symbol
    Atp5f1dprovided by MGI
    Official Full Name
    ATP synthase F1 subunit deltaprovided by MGI
    Primary source
    MGI:MGI:1913293
    See related
    Ensembl:ENSMUSG00000003072 AllianceGenome:MGI:1913293
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Atp5d; 0610008F14Rik; 1500000I11Rik
    Summary
    Predicted to enable proton transmembrane transporter activity. Predicted to contribute to ATP hydrolysis activity and proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly and proton motive force-driven mitochondrial ATP synthesis. Predicted to act upstream of or within proton transmembrane transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; eye; genitourinary system; integumental system; and nervous system. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 5. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in duodenum adult (RPKM 1424.1), adrenal adult (RPKM 1222.1) and 23 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Atp5f1d in Genome Data Viewer
    Location:
    10 C1; 10 39.72 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (79974451..79981662)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (80138698..80145828)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene strawberry notch 2 Neighboring gene STARR-seq mESC enhancer starr_27263 Neighboring gene STARR-seq mESC enhancer starr_27266 Neighboring gene serine/threonine kinase 11 Neighboring gene STARR-positive B cell enhancer ABC_E11444 Neighboring gene calcium channel, voltage-dependent, beta subunit associated regulatory protein Neighboring gene STARR-positive B cell enhancer ABC_E1806 Neighboring gene STARR-seq mESC enhancer starr_27268 Neighboring gene STARR-seq mESC enhancer starr_27269 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:79621397-79621506 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:79622453-79622640 Neighboring gene midnolin Neighboring gene STARR-positive B cell enhancer ABC_E2949 Neighboring gene cold inducible RNA binding protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    General protein information

    Preferred Names
    ATP synthase subunit delta, mitochondrial
    Names
    ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
    F-ATPase delta subunit
    NP_001334021.1
    NP_079589.2
    XP_017169541.1
    XP_030101070.1
    XP_030101071.1
    XP_030101072.1
    XP_030101073.1
    XP_036011835.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347092.2NP_001334021.1  ATP synthase subunit delta, mitochondrial isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AC159999
      Consensus CDS
      CCDS83726.1
      UniProtKB/TrEMBL
      D3Z7S4
      Related
      ENSMUSP00000101005.2, ENSMUST00000105366.2
      Conserved Domains (1) summary
      cd12152
      Location:3898
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit
    2. NM_025313.3NP_079589.2  ATP synthase subunit delta, mitochondrial isoform 1 precursor

      See identical proteins and their annotated locations for NP_079589.2

      Status: VALIDATED

      Source sequence(s)
      AC159999
      Consensus CDS
      CCDS24010.1
      UniProtKB/Swiss-Prot
      Q9D3D9
      UniProtKB/TrEMBL
      Q4FK74, Q9D0J2, Q9DCZ0
      Related
      ENSMUSP00000003156.9, ENSMUST00000003156.15
      Conserved Domains (1) summary
      cd12152
      Location:38162
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      79974451..79981662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017314052.3XP_017169541.1  ATP synthase subunit delta, mitochondrial isoform X1

      UniProtKB/Swiss-Prot
      Q9D3D9
      UniProtKB/TrEMBL
      Q4FK74, Q9D0J2, Q9DCZ0
      Conserved Domains (1) summary
      cd12152
      Location:38162
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit
    2. XM_030245212.2XP_030101072.1  ATP synthase subunit delta, mitochondrial isoform X1

      UniProtKB/Swiss-Prot
      Q9D3D9
      UniProtKB/TrEMBL
      Q4FK74, Q9D0J2, Q9DCZ0
      Conserved Domains (1) summary
      cd12152
      Location:38162
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit
    3. XM_030245213.2XP_030101073.1  ATP synthase subunit delta, mitochondrial isoform X2

      UniProtKB/TrEMBL
      D3Z7S4
      Conserved Domains (1) summary
      cd12152
      Location:3898
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit
    4. XM_036155942.1XP_036011835.1  ATP synthase subunit delta, mitochondrial isoform X1

      UniProtKB/Swiss-Prot
      Q9D3D9
      UniProtKB/TrEMBL
      Q4FK74, Q9D0J2, Q9DCZ0
      Conserved Domains (1) summary
      cd12152
      Location:38162
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit
    5. XM_030245211.2XP_030101071.1  ATP synthase subunit delta, mitochondrial isoform X1

      UniProtKB/Swiss-Prot
      Q9D3D9
      UniProtKB/TrEMBL
      Q4FK74, Q9D0J2, Q9DCZ0
      Conserved Domains (1) summary
      cd12152
      Location:38162
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit
    6. XM_030245210.2XP_030101070.1  ATP synthase subunit delta, mitochondrial isoform X1

      UniProtKB/Swiss-Prot
      Q9D3D9
      UniProtKB/TrEMBL
      Q4FK74, Q9D0J2, Q9DCZ0
      Related
      ENSMUSP00000101006.2, ENSMUST00000105367.8
      Conserved Domains (1) summary
      cd12152
      Location:38162
      F1-ATPase_delta; mitochondrial ATP synthase delta subunit