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    dmrta1 DMRT like family A1 [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100534559, updated on 21-Dec-2023

    Summary

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    Gene symbol
    dmrta1
    Gene description
    DMRT like family A1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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    Genomic context

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    See dmrta1 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    2
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG3 NC_031967.2 (14253200..14254862, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG3b NC_031968.1 (2552648..2554310, complement)

    Linkage Group LG3 - NC_031967.2Genomic Context describing neighboring genes Neighboring gene ELAV like neuron-specific RNA binding protein 2 Neighboring gene glucosidase 2 subunit beta Neighboring gene fatty acid-binding protein, intestinal Neighboring gene RNA binding protein, mRNA processing factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sexually dimorphic expression of two types of DM (Doublesex/Mab-3)-domain genes in a teleost fish, the Tilapia (Oreochromis niloticus). Guan G, et al. Biochem Biophys Res Commun, 2000 Jun 16. PMID 10860811
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sex differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    doublesex- and mab-3-related transcription factor A1
    Names
    sex-determining protein DMO

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001279481.1 → NP_001266410.1  doublesex- and mab-3-related transcription factor A1

      See identical proteins and their annotated locations for NP_001266410.1

      Status: PROVISIONAL

      Source sequence(s)
      AF203490
      UniProtKB/TrEMBL
      I3JKX7, Q9DGN9
      Conserved Domains (2) summary
      cd14417
      Location:245 → 283
      CUE_DMA_DMRTA1; CUE-like DMA domain found in doublesex- and mab-3-related transcription factor A1 (DMRTA1) and similar proteins
      pfam00751
      Location:48 → 94
      DM; DM DNA binding domain

    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031967.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      14253200..14254862 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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