Pdzk1ip1 PDZK1 interacting protein 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Pdzk1ip1provided by RGD
Official Full Name: PDZK1 interacting protein 1provided by RGD
Primary source: RGD:620952
See related: EnsemblRapid:ENSRNOG00000008161 AllianceGenome:RGD:620952
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Dd96; Map17
Summary: Predicted to be located in apical plasma membrane. Orthologous to human PDZK1IP1 (PDZK1 interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 1154.1) See more
Orthologs: human mouse all
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Genomic context

Location:: 5q35

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	5	NC_086023.1 (133841586..133859894)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	5	NC_051340.1 (128618050..128623131)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	5	NC_005104.4 (133895849..133900720)

Chromosome 5 - NC_086023.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

A membrane protein that induces high-affinity and specific Na-dependent transport of d-mannose and d-glucose in X. laevis oocytes, most likely through stimulation of the capacity of an endogenous transport system of the oocyte.
Title: Rat kidney MAP17 induces cotransport of Na-mannose and Na-glucose in Xenopus laevis oocytes.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in apical plasma membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: PDZK1-interacting protein 1

Names: 17 kDa membrane-associated protein; membrane-associated protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_130401.1 → NP_569085.1 PDZK1-interacting protein 1

See identical proteins and their annotated locations for NP_569085.1

Status: PROVISIONAL

Source sequence(s)

AF402772

UniProtKB/Swiss-Prot

Q923S2

UniProtKB/TrEMBL

A6JZ32

Conserved Domains (1) summary

pfam15807
Location:15 → 114

MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086023.1 Reference GRCr8

Range

133841586..133859894

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039110842.2 → XP_038966770.2 PDZK1-interacting protein 1 isoform X1

UniProtKB/TrEMBL

A0A8L2Q5J1

Related

ENSRNOP00000011434.3, ENSRNOT00000011434.5
XM_039110844.1 → XP_038966772.1 PDZK1-interacting protein 1 isoform X2

UniProtKB/TrEMBL

A6JZ34

Conserved Domains (1) summary

pfam15807
Location:1 → 84

MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1