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    Lce3b late cornified envelope 3B [ Mus musculus (house mouse) ]

    Gene ID: 66344, updated on 9-Dec-2024

    Summary

    Official Symbol
    Lce3bprovided by MGI
    Official Full Name
    late cornified envelope 3Bprovided by MGI
    Primary source
    MGI:MGI:1913594
    See related
    Ensembl:ENSMUSG00000042031 AllianceGenome:MGI:1913594
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sprrl6A; 2310007F04Rik
    Summary
    Orthologous to several human genes including LCE3B (late cornified envelope 3B) and LCE3C (late cornified envelope 3C). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in stomach adult (RPKM 66.9) and lung adult (RPKM 53.4) See more
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    Genomic context

    See Lce3b in Genome Data Viewer
    Location:
    3 F1; 3 40.14 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92840286..92841404)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92932979..92934096)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08316 Neighboring gene KPRP N-terminal and LCE C-terminal like protein Neighboring gene late cornified envelope 3A Neighboring gene late cornified envelope 3C Neighboring gene predicted gene, 24481

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General protein information

    Preferred Names
    late cornified envelope protein 3C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025501.4NP_079777.1  late cornified envelope protein 3C

      See identical proteins and their annotated locations for NP_079777.1

      Status: VALIDATED

      Source sequence(s)
      AC132274
      Consensus CDS
      CCDS38520.1
      UniProtKB/TrEMBL
      Q9CQM7
      Related
      ENSMUSP00000046325.4, ENSMUST00000046234.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      92840286..92841404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)