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    CRIM1-DT CRIM1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100288911, updated on 10-Dec-2024

    Summary

    Official Symbol
    CRIM1-DTprovided by HGNC
    Official Full Name
    CRIM1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:54057
    See related
    Ensembl:ENSG00000260025 AllianceGenome:HGNC:54057
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in fat (RPKM 5.5), brain (RPKM 5.1) and 23 other tissues See more
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    Genomic context

    See CRIM1-DT in Genome Data Viewer
    Location:
    2p22.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (36354749..36355570, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (36361404..36362225, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (36581892..36582713, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L50 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:36046589-36047090 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:36214716-36215915 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15574 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:36497701-36498326 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:36498327-36498951 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:36514299-36515498 Neighboring gene meiotic recombination hotspot M Neighboring gene ribosomal protein L21 pseudogene 36 Neighboring gene Sharpr-MPRA regulatory region 8328 Neighboring gene uncharacterized LOC124907753 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:36607886-36608402 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:36609434-36609948 Neighboring gene uncharacterized LOC124905989 Neighboring gene cysteine rich transmembrane BMP regulator 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037631.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CD673366, CD673367
      Related
      ENST00000822054.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      36354749..36355570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NW_003315908.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      7746..8567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      36361404..36362225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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