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    ARLN allregulin [ Homo sapiens (human) ]

    Gene ID: 401152, updated on 21-Dec-2024

    Summary

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    Official Symbol
    ARLNprovided by HGNC
    Official Full Name
    allregulinprovided by HGNC
    Primary source
    HGNC:HGNC:19225
    See related
    Ensembl:ENSG00000164096 MIM:620530; AllianceGenome:HGNC:19225
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ALN; C4orf3; HCVFTP1
    Summary
    Predicted to act upstream of or within negative regulation of ATPase-coupled calcium transmembrane transporter activity. Predicted to be located in endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in esophagus (RPKM 59.1), fat (RPKM 46.0) and 25 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See ARLN in Genome Data Viewer
    Location:
    4q26
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (119296419..119304445, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (122601521..122609545, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (120217574..120225600, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929762 Neighboring gene mitochondrial ribosomal protein L42 pseudogene 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:120130431-120131630 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:120132786-120133360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21852 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15654 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:120133934-120134507 Neighboring gene ubiquitin specific peptidase 53 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21855 Neighboring gene fatty acid binding protein 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:120263717-120264310 Neighboring gene kelch like family member 2 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:120268597-120269585 Neighboring gene RNA, U4 small nuclear 33, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. [Screening and cloning target genes transactivated by hepatitis C virus F protein using suppression subtractive hybridization technique]. Guo J, et al. Zhonghua Gan Zang Bing Za Zhi, 2005 Sep. PMID 16174453
    2. Nothing Regular about the Regulins: Distinct Functional Properties of SERCA Transmembrane Peptide Regulatory Subunits. Rathod N, et al. Int J Mol Sci, 2021 Aug 18. PMID 34445594, Free PMC Article
    3. SARS-CoV-2 envelope protein alters calcium signaling via SERCA interactions. Berta B, et al. Sci Rep, 2024 Sep 11. PMID 39261533, Free PMC Article
    4. Widespread control of calcium signaling by a family of SERCA-inhibiting micropeptides. Anderson DM, et al. Sci Signal, 2016 Dec 6. PMID 27923914, Free PMC Article
    5. NDFIP allows NEDD4/NEDD4L-induced AQP2 ubiquitination and degradation. Trimpert C, et al. PLoS One, 2017. PMID 28931009, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Observational study of gene-disease association. (HuGE Navigator)
      Title: A systematic gene-based screen of chr4q22-q32 identifies association of a novel susceptibility gene, DKK2, with the quantitative trait of alcohol dependence symptom counts.
    Submit: New GeneRIF Correction

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    sarcoplasmic/endoplasmic reticulum calcium ATPase regulator ALN
    Names
    HCV F-transactivated protein 1
    SERCA regulator ALN
    another-regulin
    hepatitis C virus F protein-transactivated protein 1
    uncharacterized protein C4orf3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001701.4 → NP_001001701.2  sarcoplasmic/endoplasmic reticulum calcium ATPase regulator ALN isoform 2

      See identical proteins and their annotated locations for NP_001001701.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream start codon, compared to variant 1. The encoded isoform (2) is shorter at the N-terminus, compared to isoform 1.
      Source sequence(s)
      AK024537, AK025703, BC017399, BU739784, CN361054, DA353224
      Consensus CDS
      CCDS43266.1
      UniProtKB/Swiss-Prot
      Q6J203, Q8WVX3
      Related
      ENSP00000485697.1, ENST00000504110.2

    2. NM_001170330.1 → NP_001163801.1  sarcoplasmic/endoplasmic reticulum calcium ATPase regulator ALN isoform 1

      See identical proteins and their annotated locations for NP_001163801.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC092656, AY605045, BU739784
      Consensus CDS
      CCDS54798.1
      UniProtKB/Swiss-Prot
      Q8WVX3
      Related
      ENSP00000382026.4, ENST00000399075.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      119296419..119304445 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      122601521..122609545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8WVX3.2 GenPept UniProtKB/Swiss-Prot:Q8WVX3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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