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    Gm7854 predicted gene 7854 [ Mus musculus (house mouse) ]

    Gene ID: 665934, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm7854provided by MGI
    Official Full Name
    predicted gene 7854provided by MGI
    Primary source
    MGI:MGI:3648234
    See related
    Ensembl:ENSMUSG00000085720 AllianceGenome:MGI:3648234
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG665934
    Expression
    Broad expression in duodenum adult (RPKM 13.0), testis adult (RPKM 7.2) and 18 other tissues See more
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    Genomic context

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    See Gm7854 in Genome Data Viewer
    Location:
    5 B3; 5 23.65 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (43309029..43392697, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (43151686..43235354, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 5554 Neighboring gene predicted gene 43700 Neighboring gene STARR-seq mESC enhancer starr_12966 Neighboring gene STARR-seq mESC enhancer starr_12967 Neighboring gene STARR-seq mESC enhancer starr_12968 Neighboring gene predicted gene, 46911 Neighboring gene cytoplasmic polyadenylation element binding protein 2 Neighboring gene STARR-seq mESC enhancer starr_12969 Neighboring gene STARR-positive B cell enhancer mm9_chr5:43715638-43715939 Neighboring gene STARR-seq mESC enhancer starr_12970 Neighboring gene predicted gene 43699 Neighboring gene STARR-seq mESC enhancer starr_12971 Neighboring gene C1q and tumor necrosis factor related protein 7 Neighboring gene predicted gene 15866

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028417.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC105174, AC115947, AC158783
      Related
      ENSMUST00000187409.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      43309029..43392697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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