Bod1l biorientation of chromosomes in cell division 1-like [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Bod1lprovided by MGI
Official Full Name: biorientation of chromosomes in cell division 1-likeprovided by MGI
Primary source: MGI:MGI:2444804
See related: Ensembl:ENSMUSG00000061755 AllianceGenome:MGI:2444804
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: FAM44A; mKIAA1327; A230054D04Rik
Summary: Predicted to enable DNA binding activity. Predicted to be involved in DNA damage response and replication fork processing. Predicted to be located in nucleoplasm. Predicted to be part of Set1C/COMPASS complex. Is expressed in forelimb; forelimb bud; hindlimb; hindlimb bud; and limb. Orthologous to human BOD1L1 (biorientation of chromosomes in cell division 1 like 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Ubiquitous expression in CNS E11.5 (RPKM 6.0), cerebellum adult (RPKM 5.4) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 5 B3; 5 22.58 cM

Exon count:: 28

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	5	NC_000071.7 (41944881..42001695, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	5	NC_000071.6 (41787538..41844355, complement)

Chromosome 5 - NC_000071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1) 1 citation

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

AF013969 (e-PCR)
- UniSTS:159369

NoName (e-PCR)
- UniSTS:235173

AI853319 (e-PCR)
- UniSTS:179160

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in DNA damage response	ISO Inferred from Sequence Orthology more info
involved_in DNA damage response	ISS Inferred from Sequence or Structural Similarity more info
involved_in DNA repair	IEA Inferred from Electronic Annotation more info
involved_in replication fork processing	IBA Inferred from Biological aspect of Ancestor more info
involved_in replication fork processing	ISO Inferred from Sequence Orthology more info
involved_in replication fork processing	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
part_of Set1C/COMPASS complex	IBA Inferred from Biological aspect of Ancestor more info
part_of Set1C/COMPASS complex	IEA Inferred from Electronic Annotation more info
part_of Set1C/COMPASS complex	ISO Inferred from Sequence Orthology more info
located_in chromosome	IEA Inferred from Electronic Annotation more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: biorientation of chromosomes in cell division protein 1-like 1

Names: family with sequence similarity 44, member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001081422.3 → NP_001074891.1 biorientation of chromosomes in cell division protein 1-like 1 isoform 1

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).

Source sequence(s)

AC102858, AC157932

Consensus CDS

CCDS39079.1

UniProtKB/Swiss-Prot

E9Q6J5, O35243, Q3TR39, Q3USW6, Q80TF0, Q8BHG7

Related

ENSMUSP00000058618.8, ENSMUST00000050556.11

Conserved Domains (2) summary

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1

pfam10310
Location:183 → 280

DUF2413; Protein of unknown function (DUF2413)
NM_001310601.1 → NP_001297530.1 biorientation of chromosomes in cell division protein 1-like 1 isoform 2

Status: VALIDATED

Description

Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region compared to variant 1. The encoded isoform (2) is shorter than isoform 1.

Source sequence(s)

AC102858, AC157932

Consensus CDS

CCDS80273.1

UniProtKB/Swiss-Prot

E9Q6J5

Related

ENSMUSP00000144359.2, ENSMUST00000202908.2

Conserved Domains (2) summary

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1

pfam10310
Location:183 → 280

DUF2413; Protein of unknown function (DUF2413)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000071.7 Reference GRCm39 C57BL/6J

Range

41944881..42001695 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006504050.5 → XP_006504113.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X1

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
XM_017321065.1 → XP_017176554.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X10

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
XM_006504055.5 → XP_006504118.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X8

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
XM_017321064.1 → XP_017176553.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X9

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
XM_006504054.5 → XP_006504117.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X7

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
XM_017321063.1 → XP_017176552.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X6

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
XM_036165408.1 → XP_036021301.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X4

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
XM_017321062.1 → XP_017176551.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X5

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
XM_006504053.3 → XP_006504116.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X3

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
XM_006504051.3 → XP_006504114.1 biorientation of chromosomes in cell division protein 1-like 1 isoform X2

Conserved Domains (2) summary

PTZ00121
Location:303 → 1041

PTZ00121; MAEBL; Provisional

pfam05205
Location:55 → 148

COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1