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    1700019A02Rik RIKEN cDNA 1700019A02 gene [ Mus musculus (house mouse) ]

    Gene ID: 69397, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1700019A02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700019A02 geneprovided by MGI
    Primary source
    MGI:MGI:1916647
    See related
    Ensembl:ENSMUSG00000060715 AllianceGenome:MGI:1916647
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 5.4) and cerebellum adult (RPKM 0.4) See more
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    Genomic context

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    See 1700019A02Rik in Genome Data Viewer
    Location:
    1 C1.1; 1 26.99 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (53197732..53226923, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (53158573..53187764, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene myostatin Neighboring gene STARR-seq mESC enhancer starr_00910 Neighboring gene predicted gene, 24349 Neighboring gene STARR-seq mESC enhancer starr_00911 Neighboring gene predicted gene 28777 Neighboring gene PMS1 homolog 1, mismatch repair system component Neighboring gene ORM1-like 1 (S. cerevisiae)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification and integrative analysis of 28 novel genes specifically expressed and developmentally regulated in murine spermatogenic cells. Hong S, et al. J Biol Chem, 2005 Mar 4. PMID 15613475
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC69397

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368200.1 → NP_001355129.1  uncharacterized protein LOC69397 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC129288
      Consensus CDS
      CCDS87827.1
      UniProtKB/TrEMBL
      A0A087WPV9
      Related
      ENSMUSP00000139938.2, ENSMUST00000190748.2

    2. NM_027070.2 → NP_081346.1  uncharacterized protein LOC69397 isoform 1

      See identical proteins and their annotated locations for NP_081346.1

      Status: VALIDATED

      Source sequence(s)
      AC129288
      Consensus CDS
      CCDS48258.1
      UniProtKB/TrEMBL
      Q9DA74
      Related
      ENSMUSP00000072089.4, ENSMUST00000072235.10

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      53197732..53226923 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496255.3 → XP_006496318.1  uncharacterized protein LOC69397 isoform X2

    2. XM_036153462.1 → XP_036009355.1  uncharacterized protein LOC69397 isoform X1

    RNA

    1. XR_373261.2 RNA Sequence

    2. XR_865288.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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