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    Vmn1r50 vomeronasal 1 receptor 50 [ Mus musculus (house mouse) ]

    Gene ID: 113852, updated on 9-Dec-2024

    Summary

    Official Symbol
    Vmn1r50provided by MGI
    Official Full Name
    vomeronasal 1 receptor 50provided by MGI
    Primary source
    MGI:MGI:2148515
    See related
    Ensembl:ENSMUSG00000094553 AllianceGenome:MGI:2148515
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    VN2; V1RA5; V1rb1
    Summary
    Predicted to enable signaling receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and response to pheromone. Predicted to act upstream of or within sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See Vmn1r50 in Genome Data Viewer
    Location:
    6 D1; 6 40.02 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (90084257..90085189)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (90107275..90108207)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor, pseudogene 31 Neighboring gene vomeronasal 1, receptor 49 Neighboring gene STARR-seq mESC enhancer starr_16610 Neighboring gene vomeronasal 1 receptor 51 Neighboring gene vomeronasal 1 receptor, pseudogene 32

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (1)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC130072

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables pheromone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to pheromone IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within sensory perception of chemical stimulus TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    vomeronasal type-1 receptor 50
    Names
    pheromone receptor VN2
    vomernasal 1 receptor Vmn1r50
    vomeronasal 1 receptor, B1
    vomeronasal receptor 1 A5
    vomeronasal receptor 2
    vomeronasal type 1 receptor B1
    vomeronasal type-1 receptor A5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053225.1NP_444455.1  vomeronasal type-1 receptor 50

      See identical proteins and their annotated locations for NP_444455.1

      Status: PROVISIONAL

      Source sequence(s)
      AF291489
      Consensus CDS
      CCDS20352.1
      UniProtKB/Swiss-Prot
      Q8VIC3, Q9EP51
      UniProtKB/TrEMBL
      F6MA62, F6MA69, F6MA72, Q1LZM7
      Related
      ENSMUSP00000080407.2, ENSMUST00000081706.2
      Conserved Domains (1) summary
      pfam03402
      Location:38302
      V1R; Vomeronasal organ pheromone receptor family, V1R

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      90084257..90085189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)