U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ermardl2 ER membrane associated RNA degradation like 2 [ Mus musculus (house mouse) ]

    Gene ID: 100041574, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ermardl2provided by MGI
    Official Full Name
    ER membrane associated RNA degradation like 2provided by MGI
    Primary source
    MGI:MGI:3583895
    See related
    Ensembl:ENSMUSG00000116953 AllianceGenome:MGI:3583895
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D17Zt9e; 9030025P20Rik
    Summary
    Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ERMARD (ER membrane associated RNA degradation). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in bladder adult (RPKM 10.0), cerebellum adult (RPKM 7.3) and 28 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ermardl2 in Genome Data Viewer
    Location:
    17 A2; 17 8.95 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (15199078..15211839)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (14978864..14991577)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1600012H06 gene Neighboring gene PHD finger protein 10 Neighboring gene dynein light chain Tctex-type 2A3 Neighboring gene predicted gene 3255 Neighboring gene STARR-seq mESC enhancer starr_41898 Neighboring gene dynein light chain Tctex-type 2A2 Neighboring gene ER membrane associated RNA degradation like 1 Neighboring gene dynein light chain Tctex-type 2A1 Neighboring gene predicted gene, 52298 Neighboring gene STARR-seq mESC enhancer starr_41899

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Isolation of candidate hybrid sterility 1 genes by cDNA selection in a 1.1 megabase pair region on mouse chromosome 17. Trachtulec Z, et al. Mamm Genome, 1997 May. PMID 9107673
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC100041574

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001123370.1 → NP_001116842.1  uncharacterized protein LOC100041574

      See identical proteins and their annotated locations for NP_001116842.1

      Status: VALIDATED

      Source sequence(s)
      AC182749, AK078855
      Consensus CDS
      CCDS49960.1
      UniProtKB/TrEMBL
      E9Q764, Q8C5D3, Q8C5I5
      Related
      ENSMUSP00000060857.10, ENSMUST00000061688.11
      Conserved Domains (1) summary
      pfam13910
      Location:133 → 214
      DUF4209; Domain of unknown function (DUF4209)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      15199078..15211839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011246223.4 → XP_011244525.1  uncharacterized protein LOC100041574 isoform X4

      Conserved Domains (1) summary
      pfam13910
      Location:7 → 88
      DUF4209; Domain of unknown function (DUF4209)

    2. XM_030249396.2 → XP_030105256.1  uncharacterized protein LOC100041574 isoform X5

      Related
      ENSMUST00000231723.2
      Conserved Domains (1) summary
      pfam13910
      Location:7 → 88
      DUF4209; Domain of unknown function (DUF4209)

    3. XM_006523367.3 → XP_006523430.1  uncharacterized protein LOC100041574 isoform X3

      UniProtKB/TrEMBL
      Q3TV04
      Conserved Domains (1) summary
      pfam13910
      Location:125 → 206
      DUF4209; Domain of unknown function (DUF4209)

    4. XM_006523366.5 → XP_006523429.1  uncharacterized protein LOC100041574 isoform X2

      UniProtKB/TrEMBL
      Q8C5I5
      Conserved Domains (1) summary
      pfam13910
      Location:132 → 213
      DUF4209; Domain of unknown function (DUF4209)

    5. XM_006523365.3 → XP_006523428.1  uncharacterized protein LOC100041574 isoform X1

      Conserved Domains (1) summary
      pfam13910
      Location:157 → 238
      DUF4209; Domain of unknown function (DUF4209)

    6. XM_030249397.2 → XP_030105257.1  uncharacterized protein LOC100041574 isoform X6

      Conserved Domains (1) summary
      pfam13910
      Location:157 → 238
      DUF4209; Domain of unknown function (DUF4209)

    7. XM_036160228.1 → XP_036016121.1  uncharacterized protein LOC100041574 isoform X7

      Conserved Domains (1) summary
      pfam13910
      Location:1 → 45
      DUF4209; Domain of unknown function (DUF4209)

    8. XM_030249398.2 → XP_030105258.1  uncharacterized protein LOC100041574 isoform X7

      Conserved Domains (1) summary
      pfam13910
      Location:1 → 45
      DUF4209; Domain of unknown function (DUF4209)

    RNA

    1. XR_004939451.1 RNA Sequence

    2. XR_004939450.1 RNA Sequence

    3. XR_003952065.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools