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    CG12316 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39650, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG12316provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036483
    Locus tag
    Dmel_CG12316
    See related
    AllianceGenome:FB:FBgn0036483
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG12316
    Summary
    Located in cytoplasm. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG12316 in Genome Data Viewer
    Location:
    71B5-71B5; 3-42 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (15131508..15136934, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (15124608..15130034, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Centrosomal protein 135kDa Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene small Cajal body-specific RNA : MeU5-U42 Neighboring gene Protein disulfide isomerase Neighboring gene antisense RNA:CR45396 Neighboring gene antisense RNA:CR45397 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional neurogenomics of the courtship song of male Drosophila melanogaster. Moran CN, et al. Cortex, 2009 Jan. PMID 19054505
    2. A misexpression screen to identify regulators of Drosophila larval hemocyte development. Stofanko M, et al. Genetics, 2008 Sep. PMID 18757933, Free PMC Article
    3. Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs. Huang ZP, et al. RNA, 2005 Aug. PMID 15987805, Free PMC Article
    4. Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. Lowe N, et al. Development, 2014 Oct. PMID 25294943, Free PMC Article
    5. In vivo analysis of proteomes and interactomes using Parallel Affinity Capture (iPAC) coupled to mass spectrometry. Rees JS, et al. Mol Cell Proteomics, 2011 Jun. PMID 21447707, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    part_of MSL complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm HDA PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG12316-PA
    CG12316-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      15131508..15136934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140495.2 → NP_648752.1  uncharacterized protein Dmel_CG12316, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648752.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VUL6
      Related
      FBpp0075404
      Conserved Domains (4) summary
      pfam05887
      Location:1026 → 1130
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)
      PHA02666
      Location:504 → 685
      PHA02666; hypothetical protein; Provisional
      cd16269
      Location:931 → 943
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:819 → 947
      GBP_C; Guanylate-binding protein, C-terminal domain

    2. NM_168611.1 → NP_730030.1  uncharacterized protein Dmel_CG12316, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_730030.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VUL6
      Related
      FBpp0075405, FBtr0075652
      Conserved Domains (4) summary
      pfam05887
      Location:1026 → 1130
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)
      PHA02666
      Location:504 → 685
      PHA02666; hypothetical protein; Provisional
      cd16269
      Location:931 → 943
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:819 → 947
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VUL6 Q9VUL6

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