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    Magix MAGI family member, X-linked [ Rattus norvegicus (Norway rat) ]

    Gene ID: 317379, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Magixprovided by RGD
    Official Full Name
    MAGI family member, X-linkedprovided by RGD
    Primary source
    RGD:1549729
    See related
    EnsemblRapid:ENSRNOG00000010092 AllianceGenome:RGD:1549729
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human MAGIX (MAGI family member, X-linked). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 134.6), Heart (RPKM 62.0) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Magix in Genome Data Viewer
    Location:
    Xq12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (17496092..17504370)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (14824114..14832466)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (15669191..15676051)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 45 Neighboring gene G patch domain and KOW motifs Neighboring gene uncharacterized LOC134484177 Neighboring gene prickle planar cell polarity protein 3 Neighboring gene proteolipid protein 2 Neighboring gene synaptophysin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    PDZ domain-containing protein MAGIX

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014109.1 → NP_001014131.1  PDZ domain-containing protein MAGIX

      See identical proteins and their annotated locations for NP_001014131.1

      Status: PROVISIONAL

      Source sequence(s)
      BC078960
      UniProtKB/Swiss-Prot
      Q6AYQ0
      Related
      ENSRNOP00000103437.1, ENSRNOT00000132124.1
      Conserved Domains (1) summary
      cd00992
      Location:127 → 209
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      17496092..17504370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039099790.2 → XP_038955718.1  PDZ domain-containing protein MAGIX isoform X2

      Related
      ENSRNOP00000013553.4, ENSRNOT00000013553.6
      Conserved Domains (1) summary
      cd00992
      Location:127 → 209
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    2. XM_039099789.2 → XP_038955717.1  PDZ domain-containing protein MAGIX isoform X1

      Conserved Domains (1) summary
      smart00228
      Location:106 → 191
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AYQ0.1 GenPept UniProtKB/Swiss-Prot:Q6AYQ0

    Gene LinkOut

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