Vom2r47 vomeronasal 2 receptor, 47 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Vom2r47provided by RGD
Official Full Name: vomeronasal 2 receptor, 47provided by RGD
Primary source: RGD:1559813
See related: EnsemblRapid:ENSRNOG00000028345 AllianceGenome:RGD:1559813
Gene type: protein coding
RefSeq status: INFERRED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Adrenal (RPKM 1.9), Brain (RPKM 1.5) and 8 other tissues See more
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Genomic context

Location:: 2q31

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	2	NC_086020.1 (151264660..151300407, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	2	NC_051337.1 (148954547..148990294, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	2	NC_005101.4 (155351173..155387002, complement)

Chromosome 2 - NC_086020.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables G protein-coupled receptor activity	IBA Inferred from Biological aspect of Ancestor more info
enables olfactory receptor activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in G protein-coupled receptor signaling pathway	IEA Inferred from Electronic Annotation more info
involved_in detection of chemical stimulus involved in sensory perception of smell	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: vomeronasal 2 receptor 47

Names: vomeronasal receptor V2R2a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001099506.1 → NP_001092976.1 vomeronasal 2 receptor 47

Status: INFERRED

Source sequence(s)

JAXUCZ010000002

UniProtKB/TrEMBL

F1MAL4

Related

ENSRNOP00000054464.4, ENSRNOT00000057657.4

Conserved Domains (4) summary

pfam00003
Location:531 → 775

7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR

pfam01094
Location:1 → 413

ANF_receptor; Receptor family ligand binding region

pfam07562
Location:457 → 507

NCD3G; Nine Cysteines Domain of family 3 GPCR

cl10011
Location:1 → 447

Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086020.1 Reference GRCr8

Range

151264660..151300407 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006232462.3 → XP_006232524.2 vomeronasal 2 receptor 47 isoform X1

UniProtKB/TrEMBL

F1MAL4

Conserved Domains (3) summary

cd15280
Location:615 → 867

7tmC_V2R-like; vomeronasal type-2 receptor-like proteins, member of the class C family of seven-transmembrane G protein-coupled receptors

cd06364
Location:51 → 534

PBP1_CaSR; ligand-binding domain of the CaSR calcium-sensing receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

pfam07562
Location:542 → 595

NCD3G; Nine Cysteines Domain of family 3 GPCR