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    Plastid-lipid associated protein PAP / fibrillin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818813, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plastid-lipid associated protein PAP / fibrillin family protein
    Primary source
    TAIR:AT2G42130
    Locus tag
    AT2G42130
    See related
    Araport:AT2G42130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T24P15.4; T24P15_4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (17566014..17568226)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Actin-like ATPase superfamily protein Neighboring gene uncharacterized protein Neighboring gene DNA polymerase delta small subunit Neighboring gene VQ motif-containing protein Neighboring gene DNA-binding bromodomain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. Vidi PA, et al. J Biol Chem, 2006 Apr 21. PMID 16414959
    2. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article
    3. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
    4. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_180031.2
    NM_201936.2
    NM_201937.1
    NM_201938.3
    NM_201939.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in plastoglobule HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    Plastid-lipid associated protein PAP / fibrillin family protein
    NP_850362.1
    • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastoglobulin 34kD (TAIR:AT3G58010.1); Has 81 Blast hits to 81 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    NP_973665.1
    • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastoglobulin 34kD (TAIR:AT3G58010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973666.1
    • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastoglobulin 34kD (TAIR:AT3G58010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973667.2
    • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastoglobulin 34kD (TAIR:AT3G58010.1); Has 147 Blast hits to 147 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    NP_973668.1
    • Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastoglobulin 34kD (TAIR:AT3G58010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17566014..17568226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201938.3 → NP_973667.2  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973667.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48521, Q84X37, Q84X38, Q84X39, Q8GY49, Q8S9M1
      UniProtKB/TrEMBL
      A0A178VT98, A0A5S9X698
      Conserved Domains (1) summary
      pfam04755
      Location:97 → 276
      PAP_fibrillin

    2. NM_201936.2 → NP_973665.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973665.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRU9
      Conserved Domains (1) summary
      pfam04755
      Location:97 → 268
      PAP_fibrillin; PAP_fibrillin

    3. NM_180031.2 → NP_850362.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850362.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S9M1
      Conserved Domains (1) summary
      pfam04755
      Location:97 → 236
      PAP_fibrillin; PAP_fibrillin

    4. NM_201939.2 → NP_973668.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973668.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IM05
      Conserved Domains (1) summary
      pfam04755
      Location:2 → 181
      PAP_fibrillin; PAP_fibrillin

    5. NM_201937.1 → NP_973666.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973666.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S9M1
      Conserved Domains (1) summary
      pfam04755
      Location:69 → 248
      PAP_fibrillin; PAP_fibrillin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S9M1.2

    Gene LinkOut

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