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    trafficking protein particle complex subunit-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819408, updated on 18-Sep-2024

    Summary

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    Official Full Name
    trafficking protein particle complex subunit-like protein
    Primary source
    TAIR:AT2G47960
    Locus tag
    AT2G47960
    See related
    Araport:AT2G47960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17A22.35
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (19625459..19629183)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DEGP protease 2 Neighboring gene miscRNA Neighboring gene myelin transcription factor-like protein Neighboring gene Nuclear pore localization protein NPL4 Neighboring gene sister-chromatid cohesion protein 3 Neighboring gene transducin family protein / WD-40 repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_130363.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    trafficking protein particle complex subunit-like protein
    NP_566117.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 285 Blast hits to 284 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19625459..19629183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130363.5 → NP_566117.1  trafficking protein particle complex subunit-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566117.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X802, O82263, Q944K4
      Conserved Domains (1) summary
      pfam06159
      Location:90 → 321
      DUF974; Protein of unknown function (DUF974)
    Nucleotide Protein
    Heading Accession and Version

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