U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOV1 NAC domain containing protein 35 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814775, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LOV1
    Official Full Name
    NAC domain containing protein 35
    Primary source
    TAIR:AT2G02450
    Locus tag
    AT2G02450
    See related
    Araport:AT2G02450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    anac034; ANAC034; ANAC035; Arabidopsis NAC domain containing protein 34; AtLOV1; LONG VEGETATIVE PHASE 1; NAC domain containing protein 35; NAC035
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOV1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (647538..650820)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene alfin-like 6 Neighboring gene AAA-type ATPase family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_126301.4
    NM_180655.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    NAC domain containing protein 35
    NP_565284.3
    • NAC domain containing protein 35 (NAC035); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 5401 Blast hits to 4721 proteins in 140 species: Archae - 0; Bacteria - 7; Metazoa - 144; Fungi - 68; Plants - 2924; Viruses - 5; Other Eukaryotes - 2253 (source: NCBI BLink).
    NP_850986.1
    • LONG VEGETATIVE PHASE 1 (LOV1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 4817 Blast hits to 4369 proteins in 130 species: Archae - 0; Bacteria - 5; Metazoa - 115; Fungi - 57; Plants - 2924; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      647538..650820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126301.4 → NP_565284.3  NAC domain containing protein 35 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565284.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H131, Q9C5E2, Q9ZVP8
      UniProtKB/TrEMBL
      A0A654ESW3
      Conserved Domains (1) summary
      pfam02365
      Location:54 → 95
      NAM; No apical meristem (NAM) protein

    2. NM_180655.2 → NP_850986.1  NAC domain containing protein 35 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850986.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ESW3
      Conserved Domains (1) summary
      pfam02365
      Location:54 → 95
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVP8.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools