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    NDL3 N-MYC downregulated-like 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816481, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NDL3
    Official Full Name
    N-MYC downregulated-like 3
    Primary source
    TAIR:AT2G19620
    Locus tag
    AT2G19620
    See related
    Araport:AT2G19620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3P11.22; F3P11_22; N-MYC downregulated-like 3
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    Genomic context

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    See NDL3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (8485991..8488963, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene K+ efflux antiporter 4 Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ASH1-related protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis NDL-AGB1 modules Play Role in Abiotic Stress and Hormonal Responses Along with Their Specific Functions. Katiyar A, et al. Int J Mol Sci, 2019 Sep 24. PMID 31554237, Free PMC Article
    2. Arabidopsis N-MYC DOWNREGULATED-LIKE1, a positive regulator of auxin transport in a G protein-mediated pathway. Mudgil Y, et al. Plant Cell, 2009 Nov. PMID 19948787, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084449.2
    NM_001335640.1
    NM_127520.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of auxin polar transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    N-MYC downregulated-like 3
    NP_001077918.1
    • N-MYC downregulated-like 3 (NDL3); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 1 (TAIR:AT5G56750.1); Has 904 Blast hits to 903 proteins in 145 species: Archae - 0; Bacteria - 134; Metazoa - 564; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
    NP_179552.1
    • N-MYC downregulated-like 3 (NDL3); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 1 (TAIR:AT5G56750.1); Has 904 Blast hits to 903 proteins in 145 species: Archae - 0; Bacteria - 134; Metazoa - 564; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8485991..8488963 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127520.4 → NP_179552.1  N-MYC downregulated-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179552.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZUN1
      UniProtKB/TrEMBL
      A0A178VUN2, A0A5S9WZC2
      Conserved Domains (1) summary
      pfam03096
      Location:21 → 305
      Ndr; Ndr family

    2. NM_001084449.2 → NP_001077918.1  N-MYC downregulated-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077918.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRP5
      Conserved Domains (2) summary
      COG0596
      Location:35 → 271
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
      pfam03096
      Location:2 → 286
      Ndr; Ndr family

    3. NM_001335640.1 → NP_001323956.1  N-MYC downregulated-like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYR3
      Conserved Domains (1) summary
      cl21494
      Location:1 → 251
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUN1.1

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