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    elongator complex protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816356, updated on 18-Sep-2024

    Summary

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    Official Full Name
    elongator complex protein
    Primary source
    TAIR:AT2G18410
    Locus tag
    AT2G18410
    See related
    Araport:AT2G18410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30D6.8; T30D6_8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (7990618..7992774)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 20 Neighboring gene ADP-ribosylation factor family protein Neighboring gene ribosomal protein L6 family protein Neighboring gene Gibberellin-regulated family protein Neighboring gene pseudo Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary Conservation in Protein-Protein Interactions and Structures of the Elongator Sub-Complex ELP456 from Arabidopsis and Yeast. Jun SE, et al. Int J Mol Sci, 2024 Apr 15. PMID 38673955, Free PMC Article
    2. Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation. Nelissen H, et al. Proc Natl Acad Sci U S A, 2010 Jan 26. PMID 20080602, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036294.2
    NM_127398.5

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in tRNA wobble uridine modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of elongator holoenzyme complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    elongator complex protein
    NP_001031371.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_179432.3
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7990618..7992774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127398.5 → NP_179432.3  elongator complex protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179432.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IQJ2, F4IQJ3, Q9ZPX3
      UniProtKB/TrEMBL
      A0A178W1H7, A0A5S9WZC0
      Conserved Domains (1) summary
      pfam10483
      Location:145 → 305
      Elong_Iki1; Elongator subunit Iki1

    2. NM_001036294.2 → NP_001031371.1  elongator complex protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031371.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IQJ2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IQJ2.1

    Gene LinkOut

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