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    Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843041, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein
    Primary source
    TAIR:AT1G67210
    Locus tag
    AT1G67210
    See related
    Araport:AT1G67210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5A8.15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (25140815..25144049)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene histone acetyltransferase of the CBP family 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. Lange H, et al. PLoS Genet, 2014 Aug. PMID 25144737, Free PMC Article
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334283.1
    NM_105390.2
    NM_202370.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of nuclear exosome targeting complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein
    NP_564890.1
    • Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (TAIR:AT5G38600.1); Has 197 Blast hits to 197 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 6; Plants - 67; Viruses - 4; Other Eukaryotes - 16 (source: NCBI BLink).
    NP_974099.1
    • Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (TAIR:AT5G38600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25140815..25144049
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105390.2 → NP_564890.1  Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564890.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WE12, A0A5S9WQC6, A0A654ENE8, A0MEE9, Q8LD15
      Conserved Domains (1) summary
      pfam04046
      Location:257 → 291
      PSP

    2. NM_001334283.1 → NP_001322827.1  Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV71
      Conserved Domains (1) summary
      pfam04046
      Location:257 → 291
      PSP

    3. NM_202370.2 → NP_974099.1  Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974099.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0MEE9, F4HRT3
      Conserved Domains (1) summary
      cl02643
      Location:257 → 291
      PSP; PSP
    Nucleotide Protein
    Heading Accession and Version

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