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    Paired amphipathic helix (PAH2) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839035, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Paired amphipathic helix (PAH2) superfamily protein
    Primary source
    TAIR:AT1G24210
    Locus tag
    AT1G24210
    See related
    Araport:AT1G24210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3I6.14; F3I6_14
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (8573544..8575184, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SIN3-like 3 Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene miscRNA Neighboring gene paired amphipathic helix repeat-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102267.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Paired amphipathic helix (PAH2) superfamily protein
    NP_564212.1
    • Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27240.1); Has 593 Blast hits to 540 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 118; Plants - 237; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8573544..8575184 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102267.3 → NP_564212.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564212.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7N3, A0A5S9VU54, A0A654ECI9, Q8LCT6
      Conserved Domains (1) summary
      pfam02671
      Location:32 → 75
      PAH; Paired amphipathic helix repeat
    Nucleotide Protein
    Heading Accession and Version

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