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    Ubiquitin-conjugating enzyme/RWD-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818467, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin-conjugating enzyme/RWD-like protein
    Primary source
    TAIR:AT2G38830
    Locus tag
    AT2G38830
    See related
    Araport:AT2G38830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13I13.6; F13I13_6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (16225777..16226872)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) Neighboring gene uncharacterized protein Neighboring gene Guanylate-binding family protein Neighboring gene Class I glutamine amidotransferase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129440.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin-conjugating enzyme/RWD-like protein
    NP_181417.2
    • Ubiquitin-conjugating enzyme/RWD-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process, protein transport; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: ELCH-like (TAIR:AT5G13860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16225777..16226872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129440.3 → NP_181417.2  Ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181417.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPA1, F4ITY4
      Conserved Domains (2) summary
      pfam09454
      Location:266 → 319
      Vps23_core; Vps23 core domain
      cl00154
      Location:37 → 148
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    Nucleotide Protein
    Heading Accession and Version

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