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    BRX-LIKE3 BREVIS RADIX-like 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841858, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BRX-LIKE3
    Official Full Name
    BREVIS RADIX-like 3
    Primary source
    TAIR:AT1G54180
    Locus tag
    AT1G54180
    See related
    Araport:AT1G54180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA BREVIS RADIX-LIKE 3; ATBRXL3; BREVIS RADIX-like 3; F15I1.28; F15I1_28
    Summary
    Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.
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    Genomic context

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    See BRX-LIKE3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (20227168..20230237)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CTC-interacting domain 3 Neighboring gene ncRNA Neighboring gene DNA mismatch repair Msh6-like protein Neighboring gene Ubiquitin-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160950.2
    NM_104296.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BREVIS RADIX-like 3
    NP_001154422.1
    • BREVIS RADIX-like 3 (BRX-LIKE3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (TAIR:AT3G14000.2); Has 729 Blast hits to 418 proteins in 28 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 726; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_175820.2
    • BREVIS RADIX-like 3 (BRX-LIKE3); CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (TAIR:AT3G14000.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20227168..20230237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160950.2 → NP_001154422.1  BREVIS RADIX-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154422.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9T5, A0A5S9WPT8
      Conserved Domains (2) summary
      pfam08381
      Location:288 → 343
      BRX; Transcription factor regulating root and shoot growth via Pin3
      pfam13713
      Location:31 → 62
      BRX_N; Transcription factor BRX N-terminal domain

    2. NM_104296.5 → NP_175820.2  BREVIS RADIX-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175820.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5HZ09, Q5M752, Q5XVI3, Q9SYH6
      UniProtKB/TrEMBL
      A0A5S9WPT8
      Conserved Domains (2) summary
      pfam08381
      Location:314 → 368
      BRX; Transcription factor regulating root and shoot growth via Pin3
      pfam13713
      Location:31 → 61
      BRX_N; Transcription factor BRX N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5HZ09.2

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