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    UBP1A oligouridylate-binding protein 1A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841846, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBP1A
    Official Full Name
    oligouridylate-binding protein 1A
    Primary source
    TAIR:AT1G54080
    Locus tag
    AT1G54080
    See related
    Araport:AT1G54080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15I1.16; F15I1_16; oligouridylate-binding protein 1A
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    Genomic context

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    See UBP1A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (20183545..20187096, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 6B-interacting protein 1-like 1 Neighboring gene Dormancy/auxin associated family protein Neighboring gene exocyst subunit exo70 family protein D2 Neighboring gene DUF1677 family protein, putative (DUF1677)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants. Lambermon MH, et al. Mol Cell Biol, 2002 Jun. PMID 12024044, Free PMC Article
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104285.5
    NM_179475.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oligouridylate-binding protein 1A
    NP_175810.1
    • oligouridylate-binding protein 1A (UBP1A); FUNCTIONS IN: mRNA 3'-UTR binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 26408 Blast hits to 16156 proteins in 1551 species: Archae - 2; Bacteria - 177; Metazoa - 9876; Fungi - 6429; Plants - 6014; Viruses - 0; Other Eukaryotes - 3910 (source: NCBI BLink).
    NP_849806.1
    • oligouridylate-binding protein 1A (UBP1A); FUNCTIONS IN: mRNA 3'-UTR binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 22193 Blast hits to 15481 proteins in 722 species: Archae - 0; Bacteria - 1057; Metazoa - 11734; Fungi - 2918; Plants - 4318; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20183545..20187096 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104285.5 → NP_175810.1  oligouridylate-binding protein 1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175810.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SYG4
      UniProtKB/TrEMBL
      A0A7G2E2S7
      Conserved Domains (2) summary
      TIGR01628
      Location:64 → 324
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12619
      Location:149 → 223
      RRM2_PUB1; RNA recognition motif 2 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins

    2. NM_179475.1 → NP_849806.1  oligouridylate-binding protein 1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849806.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E2S7, F4HV67
      Conserved Domains (4) summary
      cd12352
      Location:65 → 135
      RRM1_TIA1_like; RNA recognition motif 1 in granule-associated RNA binding proteins p40-TIA-1 and TIAR
      cd12354
      Location:273 → 348
      RRM3_TIA1_like; RNA recognition motif 2 in granule-associated RNA binding proteins (p40-TIA-1 and TIAR), and yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
      cd12619
      Location:149 → 227
      RRM2_PUB1; RNA recognition motif 2 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins
      TIGR01661
      Location:74 → 331
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SYG4.1

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