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    ASIL1 6B-interacting protein 1-like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841844, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ASIL1
    Official Full Name
    6B-interacting protein 1-like 1
    Primary source
    TAIR:AT1G54060
    Locus tag
    AT1G54060
    See related
    Araport:AT1G54060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    6B-interacting protein 1-like 1; F15I1.14; F15I1_14
    Summary
    Member of the trihelix DNA binding protein family. Nuclear localized. Involved in repressing seed maturation genes during seed germination and seedling development.
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    Genomic context

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    See ASIL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (20180610..20182374)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene epithiospecifier protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene Dormancy/auxin associated family protein Neighboring gene oligouridylate-binding protein 1A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ASIL1 is required for proper timing of seed filling in Arabidopsis. Gao MJ, et al. Plant Signal Behav, 2011 Dec. PMID 22231199, Free PMC Article
    2. Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings. Gao MJ, et al. Plant Cell, 2009 Jan. PMID 19155348, Free PMC Article
    3. MicroRNAs regulate the timing of embryo maturation in Arabidopsis. Willmann MR, et al. Plant Physiol, 2011 Apr. PMID 21330492, Free PMC Article
    4. Enhanced Y1H assays for Arabidopsis. Gaudinier A, et al. Nat Methods, 2011 Oct 30. PMID 22037706, Free PMC Article
    5. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. de Lucas M, et al. Plant Cell, 2016 Oct. PMID 27650334, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ASIL1 acts as a temporal regulator of seed filling.
      Title: ASIL1 is required for proper timing of seed filling in Arabidopsis.
    2. ASIL1 is a regulator that represses the expression of embryonic seed maturation genes in vegetative tissues.
      Title: Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104283.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of shoot system development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within seed maturation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    6B-interacting protein 1-like 1
    NP_564648.1
    • 6B-interacting protein 1-like 1 (ASIL1); FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of shoot development, regulation of seed germination, regulation of transcription; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G14180.1); Has 1288 Blast hits to 1162 proteins in 176 species: Archae - 0; Bacteria - 142; Metazoa - 401; Fungi - 73; Plants - 538; Viruses - 7; Other Eukaryotes - 127 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20180610..20182374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104283.3 → NP_564648.1  6B-interacting protein 1-like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564648.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SYG2
      UniProtKB/TrEMBL
      A0A5S9WRN2, A0A654EK04
      Conserved Domains (1) summary
      pfam13837
      Location:92 → 177
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SYG2.1

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