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    Calcium-binding EF-hand family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841887, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcium-binding EF-hand family protein
    Primary source
    TAIR:AT1G54450
    Locus tag
    AT1G54450
    See related
    Araport:AT1G54450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D21.27; F20D21_27
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (20336203..20339769, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein Neighboring gene Protein of unknown function (PD694200) Neighboring gene TPX2 (targeting protein for Xklp2) protein family Neighboring gene resistance to peronospora parasitica protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104323.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Calcium-binding EF-hand family protein
    NP_175847.1
    • Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G28850.2); Has 645 Blast hits to 642 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 309; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20336203..20339769 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104323.4 → NP_175847.1  Calcium-binding EF-hand family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175847.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SLI8
      UniProtKB/TrEMBL
      A0A178WLQ8, A0A5S9WPY5, A0A654EIE9
      Conserved Domains (1) summary
      cd21504
      Location:203 → 476
      PPP2R3A_B-like; serine/threonine protein phosphatase 2A regulatory subunit B" alpha and beta subunits, and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SLI8.1

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