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    SCL5 scarecrow-like 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841482, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SCL5
    Official Full Name
    scarecrow-like 5
    Primary source
    TAIR:AT1G50600
    Locus tag
    AT1G50600
    See related
    Araport:AT1G50600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11F12.8; F11F12_8; scarecrow-like 5
    Summary
    Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family.
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    Genomic context

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    See SCL5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (18737063..18739649, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene RING/FYVE/PHD zinc finger superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis. Gonzalez N, et al. Plant Cell, 2015 Aug. PMID 26232487, Free PMC Article
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333446.1
    NM_103942.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    scarecrow-like 5
    NP_175475.2
    • scarecrow-like 5 (SCL5); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G48150.2); Has 3554 Blast hits to 3276 proteins in 342 species: Archae - 0; Bacteria - 9; Metazoa - 107; Fungi - 18; Plants - 2497; Viruses - 1; Other Eukaryotes - 922 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18737063..18739649 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333445.1 → NP_001323177.1  scarecrow-like 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W576, A0A1P8AW90

    2. NM_103942.3 → NP_175475.2  scarecrow-like 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175475.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7EXH0, Q8H125, Q94BW9, Q9LPT0, Q9XE53
      UniProtKB/TrEMBL
      A0A178W576
      Conserved Domains (1) summary
      pfam03514
      Location:227 → 597
      GRAS; GRAS domain family

    3. NM_001333446.1 → NP_001323176.1  scarecrow-like 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW83, A0A5S9WNQ2, A0A654EIS9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H125.1

    Gene LinkOut

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