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    FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840361, updated on 18-Sep-2024

    Summary

    Official Full Name
    FAD-binding Berberine family protein
    Primary source
    TAIR:AT1G34575
    Locus tag
    AT1G34575
    See related
    Araport:AT1G34575
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (12657027..12658756, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF1184) Neighboring gene Essential protein Yae1, N-terminal Neighboring gene Major facilitator superfamily protein Neighboring gene pseudo

    General gene information

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
     
    located_in plant-type cell wall ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    FAD-binding Berberine family protein
    NP_564449.1
    • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30710.1); Has 4043 Blast hits to 3915 proteins in 583 species: Archae - 26; Bacteria - 1650; Metazoa - 0; Fungi - 1565; Plants - 666; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12657027..12658756 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103181.2NP_564449.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564449.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HV09, Q9LNL9
      UniProtKB/TrEMBL
      A0A7G2E1J0
      Conserved Domains (3) summary
      COG0277
      Location:61283
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
      pfam01565
      Location:78216
      FAD_binding_4; FAD binding domain
      pfam08031
      Location:467522
      BBE; Berberine and berberine like