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    PHD finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844117, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PHD finger family protein
    Primary source
    TAIR:AT1G77800
    Locus tag
    AT1G77800
    See related
    Araport:AT1G77800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T32E8.13; T32E8_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    20
    Sequence:
    Chromosome: 1; NC_003070.9 (29253332..29260617)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene ncRNA Neighboring gene Galactosyltransferase family protein Neighboring gene ribonuclease H superfamily polynucleotidyl transferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conserved and plant-specific histone acetyltransferase complexes cooperate to regulate gene transcription and plant development. Wu CJ, et al. Nat Plants, 2023 Mar. PMID 36879016
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001198493.1
    NM_001334795.1
    NM_001334796.1
    NM_001334797.1
    NM_001334798.1
    NM_106429.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein-macromolecule adaptor activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to hormone IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    PHD finger family protein
    NP_001185422.1
    • PHD finger family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1).
    NP_177903.5
    • PHD finger family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 3411 Blast hits to 1845 proteins in 212 species: Archae - 0; Bacteria - 3; Metazoa - 1916; Fungi - 635; Plants - 520; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29253332..29260617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334794.1 → NP_001321109.1  PHD finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APX1, A0A654EPW8

    2. NM_106429.6 → NP_177903.5  PHD finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177903.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EPW8, F4I8J3
      Conserved Domains (3) summary
      pfam13831
      Location:973 → 1005
      PHD_2; PHD-finger
      pfam13832
      Location:1025 → 1128
      zf-HC5HC2H_2; PHD-zinc-finger like domain
      cl22851
      Location:338 → 474
      PHD_SF; PHD finger superfamily

    3. NM_001334795.1 → NP_001321107.1  PHD finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APU9, A0A654EPW8

    4. NM_001334796.1 → NP_001321108.1  PHD finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDJ6, A0A1P8APX7

    5. NM_001334798.1 → NP_001321110.1  PHD finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDJ6, A0A1P8APX4

    6. NM_001334797.1 → NP_001321106.1  PHD finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFM9, A0A1P8APX3

    7. NM_001198493.1 → NP_001185422.1  PHD finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185422.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EPW8, F4I8J4
      Conserved Domains (3) summary
      pfam13831
      Location:973 → 1005
      PHD_2; PHD-finger
      pfam13832
      Location:1025 → 1128
      zf-HC5HC2H_2; PHD-zinc-finger like domain
      cl22851
      Location:338 → 474
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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