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    PUB45 plant U-box 45 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839684, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUB45
    Official Full Name
    plant U-box 45
    Primary source
    TAIR:AT1G27910
    Locus tag
    AT1G27910
    See related
    Araport:AT1G27910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA PLANT U-BOX 45; ATPUB45; F13K9.2; F13K9_2; plant U-box 45
    Summary
    Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
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    Genomic context

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    See PUB45 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (9720733..9724800, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DEAD/DEAH box RNA helicase family protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene RNA helicase family protein Neighboring gene ncRNA Neighboring gene microtubule-associated protein 65-8 Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family. Mudgil Y, et al. Plant Physiol, 2004 Jan. PMID 14657406, Free PMC Article
    2. Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis. Samuel MA, et al. Plant Physiol, 2008 Aug. PMID 18552232, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102556.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transmembrane receptor protein serine/threonine kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant U-box 45
    NP_174112.1
    • plant U-box 45 (PUB45); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 2726 Blast hits to 2661 proteins in 214 species: Archae - 0; Bacteria - 25; Metazoa - 192; Fungi - 159; Plants - 2120; Viruses - 3; Other Eukaryotes - 227 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9720733..9724800 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102556.5 → NP_174112.1  plant U-box 45 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174112.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WLV7, Q9C7G1
      UniProtKB/TrEMBL
      A0A5S9W6U1, A0A654EF57, A0A7G2DYI0
      Conserved Domains (3) summary
      smart00504
      Location:282 → 345
      Ubox; Modified RING finger domain
      PLN03200
      Location:638 → 700
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:415 → 449
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C7G1.1

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