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    AGP27 arabinogalactan protein 27 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819810, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGP27
    Official Full Name
    arabinogalactan protein 27
    Primary source
    TAIR:AT3G06360
    Locus tag
    AT3G06360
    See related
    Araport:AT3G06360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinogalactan protein 27; ARABINOGALACTAN PROTEIN 27; ATAGP27; F24P17.17; F24P17_17
    Summary
    Encodes an arabinogalactan-protein (AGP27).
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    Genomic context

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    See AGP27 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (1928868..1929684)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene dehydroquinate dehydratase, putative / shikimate dehydrogenase Neighboring gene sodium hydrogen exchanger 4 Neighboring gene tubby-like protein 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
    2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111511.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan protein 27
    NP_566282.1
    • arabinogalactan protein 27 (AGP27); Has 143 Blast hits to 114 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 17; Fungi - 12; Plants - 53; Viruses - 8; Other Eukaryotes - 51 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1928868..1929684
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111511.2 → NP_566282.1  arabinogalactan protein 27 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566282.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SQT9
      UniProtKB/TrEMBL
      A0A178VHI1, A0A654F9X9, A0MEU7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SQT9.1

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