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    RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821192, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/FYVE/PHD zinc finger superfamily protein
    Primary source
    TAIR:AT3G02890
    Locus tag
    AT3G02890
    See related
    Araport:AT3G02890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13E7.16; F13E7_16
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (640169..645692)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene GAST1 protein homolog 5 Neighboring gene Low-density receptor-like protein Neighboring gene ncRNA Neighboring gene AIG2-like (avirulence induced gene) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis. Zhang YZ, et al. Nat Commun, 2020 Dec 4. PMID 33277495, Free PMC Article
    2. A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis. Duan CG, et al. Proc Natl Acad Sci U S A, 2017 Aug 29. PMID 28808009, Free PMC Article
    3. A histone H3K27me3 reader cooperates with a family of PHD finger-containing proteins to regulate flowering time in Arabidopsis. Qian F, et al. J Integr Plant Biol, 2021 Apr. PMID 33433058
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337442.1
    NM_001337443.1
    NM_001337444.1
    NM_111159.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone reader activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone reader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of gene expression, epigenetic IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within negative regulation of transcription elongation by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within_negative_effect regulation of photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/FYVE/PHD zinc finger superfamily protein
    NP_186939.2
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G16680.1); Has 3422 Blast hits to 2706 proteins in 325 species: Archae - 2; Bacteria - 367; Metazoa - 1746; Fungi - 295; Plants - 487; Viruses - 5; Other Eukaryotes - 520 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      640169..645692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111159.3 → NP_186939.2  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186939.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IYH6, Q9M8T1
      UniProtKB/TrEMBL
      A0A5S9X9M7, A0A654F4Y6
      Conserved Domains (1) summary
      cl22851
      Location:215 → 260
      PHD_SF; PHD finger superfamily

    2. NM_001337442.1 → NP_001325442.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LL91, A0A7G2EHQ2

    3. NM_001337443.1 → NP_001325441.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCC4, A0A1I9LL90

    4. NM_001337444.1 → NP_001325443.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCC4, A0A1I9LL92
    Nucleotide Protein
    Heading Accession and Version

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