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    CEG F-box and associated interaction domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821836, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CEG
    Official Full Name
    F-box and associated interaction domains-containing protein
    Primary source
    TAIR:AT3G22650
    Locus tag
    AT3G22650
    See related
    Araport:AT3G22650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSFL61; CEGENDUO; S-LOCUS F-BOX 61; SFL61
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    Genomic context

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    See CEG in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (8014809..8015960)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 20S proteasome beta subunit D1 Neighboring gene cupin family protein Neighboring gene rRNA processing protein-like protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene RNA-DIRECTED DNA METHYLATION 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An auxin-inducible F-box protein CEGENDUO negatively regulates auxin-mediated lateral root formation in Arabidopsis. Dong L, et al. Plant Mol Biol, 2006 Mar. PMID 16525894
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CEGEDUO (CEG, AtSFL61) is a novel negative regulator involved in the auxin-mediated lateral root production in Arabidopsis. [CEG] [AtSFL61]
      Title: An auxin-inducible F-box protein CEGENDUO negatively regulates auxin-mediated lateral root formation in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lateral root formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in pollen tube IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box and associated interaction domains-containing protein
    NP_188904.1
    • CEGENDUO (CEG); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G21410.1); Has 1449 Blast hits to 1413 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1447; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8014809..8015960
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338594.1 → NP_001327426.1  F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J1L1, Q9LUJ6
      UniProtKB/TrEMBL
      A0A178VCQ4
      Conserved Domains (3) summary
      smart00256
      Location:9 → 49
      FBOX; A Receptor for Ubiquitination Targets
      pfam07734
      Location:204 → 377
      FBA_1; F-box associated
      TIGR01640
      Location:94 → 323
      F_box_assoc_1; F-box protein interaction domain

    2. NM_113164.1 → NP_188904.1  F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188904.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCQ4
      Conserved Domains (3) summary
      smart00256
      Location:9 → 49
      FBOX; A Receptor for Ubiquitination Targets
      pfam07734
      Location:194 → 366
      FBA_1; F-box associated
      TIGR01640
      Location:94 → 312
      F_box_assoc_1; F-box protein interaction domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUJ6.1

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