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    WIP4 WIP domain protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821637, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WIP4
    Official Full Name
    WIP domain protein 4
    Primary source
    TAIR:AT3G20880
    Locus tag
    AT3G20880
    See related
    Araport:AT3G20880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MOE17.19; WIP domain protein 4
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    Genomic context

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    See WIP4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (7313538..7315883, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene arabinogalactan protein 40 Neighboring gene ZIP metal ion transporter family Neighboring gene tRNA-Ser Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Crawford BC, et al. Science, 2015 Feb 6. PMID 25612610
    2. Weird fingers: functional analysis of WIP domain proteins. Appelhagen I, et al. FEBS Lett, 2010 Jul 16. PMID 20541552
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112980.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within primary root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WIP domain protein 4
    NP_188724.2
    • WIP domain protein 4 (WIP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: central root cap of the primary root, quiescent center; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 13660 Blast hits to 9603 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 12537; Fungi - 114; Plants - 690; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7313538..7315883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112980.3 → NP_188724.2  WIP domain protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188724.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8W030, Q9LT33
      UniProtKB/TrEMBL
      A0A178VN07, A0A5S9XE40
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W030.1

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