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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817338, updated on 18-Sep-2024

    Summary

    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT2G27940
    Locus tag
    AT2G27940
    See related
    Araport:AT2G27940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1E2.14; T1E2_14
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (11897942..11898867)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene Ring/U-Box superfamily protein Neighboring gene cyclin-dependent kinase-subunit 1

    Interactions

    General gene information

    NM_128353.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    is_active_in cellular_component  

    General protein information

    Preferred Names
    RING/U-box superfamily protein
    NP_180361.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: leaf apex, root, carpel, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 9623 Blast hits to 9595 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2405; Fungi - 805; Plants - 5009; Viruses - 51; Other Eukaryotes - 1353 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11897942..11898867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128353.2 → NP_180361.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180361.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJJ7
      UniProtKB/TrEMBL
      A0A178VQG7, A0A5S9X1U6
      Conserved Domains (1) summary
      cd16461
      Location:139 → 182
      RING-H2_EL5_like; RING finger, H2 subclass, found in rice E3 ubiquitin-protein ligase EL5 and similar proteins
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