U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CBS domain-containing protein / transporter associated domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820495, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    CBS domain-containing protein / transporter associated domain-containing protein
    Primary source
    TAIR:AT3G13070
    Locus tag
    AT3G13070
    See related
    Araport:AT3G13070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (4191237..4195471, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene evolutionarily conserved C-terminal region 5 Neighboring gene ncRNA Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene STRUBBELIG-receptor family 4 Neighboring gene uncharacterized protein Neighboring gene multidrug resistance-associated protein 3 Neighboring gene multidrug resistance-associated protein 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Two magnesium transporters in the chloroplast inner envelope essential for thylakoid biogenesis in Arabidopsis. Zhang B, et al. New Phytol, 2022 Oct. PMID 35776059
    2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_112146.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within magnesium ion transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CBS domain-containing protein / transporter associated domain-containing protein
    NP_187914.1
    • CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated domain (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT1G55930.1); Has 15808 Blast hits to 15803 proteins in 2590 species: Archae - 162; Bacteria - 11531; Metazoa - 244; Fungi - 136; Plants - 197; Viruses - 0; Other Eukaryotes - 3538 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4191237..4195471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112146.3 → NP_187914.1  CBS domain-containing protein / transporter associated domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187914.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK65
      UniProtKB/TrEMBL
      A0A178VB23, A0A5S9XD09
      Conserved Domains (4) summary
      COG0517
      Location:355 → 474
      CBS; CBS domain [Signal transduction mechanisms]
      cd04590
      Location:363 → 476
      CBS_pair_CorC_HlyC_assoc; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in ...
      pfam01595
      Location:177 → 340
      DUF21; Domain of unknown function DUF21
      pfam03471
      Location:499 → 604
      CorC_HlyC; Transporter associated domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LK65.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools