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    transmembrane protein, putative (DUF707) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822248, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF707)
    Primary source
    TAIR:AT3G26440
    Locus tag
    AT3G26440
    See related
    Araport:AT3G26440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (9676564..9683499)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4B1 Neighboring gene tRNA modification 11 protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein Neighboring gene beta-1,4-N-acetylglucosaminyltransferase family protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene Powdery mildew resistance protein, RPW8 domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035694.3
    NM_001084742.1
    NM_001203052.1
    NM_001338802.1
    NM_001338803.1
    NM_113551.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF707)
    NP_001030771.1
    • Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G13000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078211.1
    • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G13000.2); Has 328 Blast hits to 327 proteins in 28 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    NP_001189981.1
    • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G13000.2).
    NP_566793.1
    • Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G13000.2); Has 327 Blast hits to 326 proteins in 27 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9676564..9683499
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203052.1 → NP_001189981.1  transmembrane protein, putative (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189981.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JCJ2, Q9LIN1
      Conserved Domains (1) summary
      pfam05212
      Location:72 → 355
      DUF707; Protein of unknown function (DUF707)

    2. NM_001035694.3 → NP_001030771.1  transmembrane protein, putative (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030771.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DHF0, Q943Z7
      Conserved Domains (1) summary
      pfam05212
      Location:96 → 379
      DUF707; Protein of unknown function (DUF707)

    3. NM_113551.4 → NP_566793.1  transmembrane protein, putative (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566793.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DHF0, Q943Z7
      Conserved Domains (1) summary
      pfam05212
      Location:96 → 379
      DUF707; Protein of unknown function (DUF707)

    4. NM_001338802.1 → NP_001325580.1  transmembrane protein, putative (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLN8, A0A654FG99

    5. NM_001084742.1 → NP_001078211.1  transmembrane protein, putative (DUF707) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078211.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VI91, A8MQR2
      Conserved Domains (1) summary
      pfam05212
      Location:96 → 362
      DUF707; Protein of unknown function (DUF707)

    6. NM_001338803.1 → NP_001325579.1  transmembrane protein, putative (DUF707) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLN7, A0A654FG99
    Nucleotide Protein
    Heading Accession and Version

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