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    RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837206, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Primary source
    TAIR:AT1G06960
    Locus tag
    AT1G06960
    See related
    Araport:AT1G06960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10K1.32; F10K1_32
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (2135810..2137838)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TPRXL Neighboring gene translocon at the inner envelope membrane of chloroplasts 110 Neighboring gene cation/hydrogen exchanger 14 Neighboring gene 6,7-dimethyl-8-ribityllumazine synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome. Calixto CPG, et al. Plant Cell, 2018 Jul. PMID 29764987, Free PMC Article
    2. Coiled body numbers in the Arabidopsis root epidermis are regulated by cell type, developmental stage and cell cycle parameters. Boudonck K, et al. J Cell Sci, 1998 Dec 18. PMID 9819359
    3. Evolutionary conservation of minor U12-type spliceosome between plants and humans. Lorkovic ZJ, et al. RNA, 2005 Jul. PMID 15987817, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084003.2
    NM_001331673.1
    NM_001331675.1
    NM_001331676.1
    NM_180605.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Cajal body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of U2 snRNP IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT located_in nucleolus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding (RRM/RBD/RNP motifs) family protein
    NP_001077472.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 1065 Blast hits to 1057 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 436; Fungi - 293; Plants - 198; Viruses - 1; Other Eukaryotes - 137 (source: NCBI BLink).
    NP_001318937.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 1642 Blast hits to 1628 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 797; Fungi - 381; Plants - 271; Viruses - 1; Other Eukaryotes - 190 (source: NCBI BLink).
    NP_850936.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 815; Fungi - 369; Plants - 285; Viruses - 1; Other Eukaryotes - 192 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2135810..2137838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331674.1 → NP_001321352.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQM1

    2. NM_001084003.2 → NP_001077472.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077472.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654E7D8
      Conserved Domains (3) summary
      COG0724
      Location:116 → 199
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12246
      Location:8 → 59
      RRM1_U1A_like; RNA recognition motif 1 in the U1A/U2B"/SNF protein family
      cd12247
      Location:124 → 196
      RRM2_U1A_like; RNA recognition motif 2 in the U1A/U2B"/SNF protein family

    3. NM_001331673.1 → NP_001318937.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJJ4, A0A2H1ZEA7, A0A384LMW6
      Conserved Domains (1) summary
      cd12246
      Location:12 → 88
      RRM1_U1A_like; RNA recognition motif 1 (RRM1) found in the U1A/U2B"/SNF protein family

    4. NM_180605.2 → NP_850936.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850936.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MRK1, F4HNV4, Q8H1S6, Q8RXP9, Q9LMJ0
      UniProtKB/TrEMBL
      A0A178WJB3, A0A5S9T166, A0A654E7D8
      Conserved Domains (2) summary
      cd12246
      Location:12 → 88
      RRM1_U1A_like; RNA recognition motif 1 (RRM1) found in the U1A/U2B"/SNF protein family
      cd12247
      Location:153 → 225
      RRM2_U1A_like; RNA recognition motif 2 (RRM2) found in the U1A/U2B"/SNF protein family

    5. NM_001331676.1 → NP_001321353.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQQ1

    6. NM_001331675.1 → NP_001321351.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQK9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1S6.1

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