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    PME38 pectin methylesterase 38 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828218, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PME38
    Official Full Name
    pectin methylesterase 38
    Primary source
    TAIR:AT4G00190
    Locus tag
    AT4G00190
    See related
    Araport:AT4G00190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. THALIANA PECTIN METHYLESTERASE 38; ATPME38; F6N15.23; F6N15_23; pectin methylesterase 38
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    Genomic context

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    See PME38 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (80433..82040, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Plant-specific transcription factor YABBY family protein Neighboring gene ncRNA Neighboring gene AT hook motif DNA-binding family protein Neighboring gene LOB domain-containing protein 31

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    pectin methylesterase 38
    NP_191930.1
    • pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      80433..82040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116236.1 → NP_191930.1  pectin methylesterase 38 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191930.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81320
      UniProtKB/TrEMBL
      A0A654FKI9
      Conserved Domains (3) summary
      PLN02713
      Location:7 → 474
      PLN02713; Probable pectinesterase/pectinesterase inhibitor
      cd15798
      Location:7 → 140
      PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
      cl01911
      Location:164 → 458
      Pectinesterase; Pectinesterase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81320.1

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