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    Riboflavin synthase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826725, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Riboflavin synthase-like superfamily protein
    Primary source
    TAIR:AT4G11230
    Locus tag
    AT4G11230
    See related
    Araport:AT4G11230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L21.20; F8L21_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    14
    Sequence:
    Chromosome: 4; NC_003075.7 (6840473..6845627, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Leu Neighboring gene VIRB2-interacting protein 2 Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene AGAMOUS-like 52

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The NADPH-oxidase AtRbohI plays a positive role in drought-stress response in Arabidopsis thaliana. He H, et al. Biochem Biophys Res Commun, 2017 Sep 23. PMID 28559135
    2. Production of reactive oxygen species by plant NADPH oxidases. Sagi M, et al. Plant Physiol, 2006 Jun. PMID 16760484, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_117194.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Riboflavin synthase-like superfamily protein
    NP_192862.2
    • Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1); Has 2278 Blast hits to 2159 proteins in 340 species: Archae - 6; Bacteria - 242; Metazoa - 694; Fungi - 630; Plants - 513; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6840473..6845627 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117194.4 → NP_192862.2  Riboflavin synthase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192862.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SUT8
      UniProtKB/TrEMBL
      A0A178UXP6, A0A5S9XRX1
      Conserved Domains (5) summary
      cd06186
      Location:616 → 849
      NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
      pfam01794
      Location:422 → 560
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08030
      Location:733 → 923
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam08414
      Location:163 → 257
      NADPH_Ox; Respiratory burst NADPH oxidase
      cl08302
      Location:238 → 283
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUT8.2

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