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    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828493, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    Primary source
    TAIR:AT4G23930
    Locus tag
    AT4G23930
    See related
    Araport:AT4G23930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T32A16.100; T32A16_100
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (12435946..12436827, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Ala Neighboring gene UDP-D-glucose/UDP-D-galactose 4-epimerase 2 Neighboring gene FtsH extracellular protease family Neighboring gene Galactose-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_118525.3
    NM_202874.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    NP_194124.1
    • Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT1G64450.1); Has 327 Blast hits to 319 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 327; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974603.1
    • Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT1G64450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12435946..12436827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202874.1 → NP_974603.1  Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974603.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JPE5
      Conserved Domains (1) summary
      cl12118
      Location:2 → 160
      LEA_2; Late embryogenesis abundant protein

    2. NM_118525.3 → NP_194124.1  Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194124.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FSM1, Q9T0A8
      Conserved Domains (1) summary
      cl12118
      Location:2 → 187
      LEA_2; Late embryogenesis abundant protein
    Nucleotide Protein
    Heading Accession and Version

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