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    GH9A3 glycosyl hydrolase 9A3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828527, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9A3
    Official Full Name
    glycosyl hydrolase 9A3
    Primary source
    TAIR:AT4G24260
    Locus tag
    AT4G24260
    See related
    Araport:AT4G24260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGH9A3; AtKOR3; glycosyl hydrolase 9A3; KOR3; T22A6.90; T22A6_90
    Summary
    Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.
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    Genomic context

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    See GH9A3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (12577630..12580415, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 7 Neighboring gene Seven transmembrane MLO family protein Neighboring gene homeobox protein Neighboring gene EMBRYO DEFECTIVE 140

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis endo-1,4-beta-glucanases are involved in the formation of root syncytia induced by Heterodera schachtii. Wieczorek K, et al. Plant J, 2008 Jan. PMID 18069944
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341656.1
    NM_001341657.1
    NM_118559.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to nematode IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9A3
    NP_194157.1
    • glycosyl hydrolase 9A3 (GH9A3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9A1 (TAIR:AT5G49720.1); Has 1666 Blast hits to 1648 proteins in 232 species: Archae - 2; Bacteria - 516; Metazoa - 186; Fungi - 17; Plants - 908; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12577630..12580415 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118559.2 → NP_194157.1  glycosyl hydrolase 9A3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194157.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9STW8
      UniProtKB/TrEMBL
      A0A178UVE8
      Conserved Domains (1) summary
      cl02959
      Location:112 → 588
      Glyco_hydro_9; Glycosyl hydrolase family 9

    2. NM_001341656.1 → NP_001329771.1  glycosyl hydrolase 9A3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8Q5

    3. NM_001341657.1 → NP_001329770.1  glycosyl hydrolase 9A3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8R5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9STW8.1

    Gene LinkOut

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