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    VPS22 EAP30/Vps36 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828812, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VPS22
    Official Full Name
    EAP30/Vps36 family protein
    Primary source
    TAIR:AT4G27040
    Locus tag
    AT4G27040
    See related
    Araport:AT4G27040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M23.380; F10M23_380
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    Genomic context

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    See VPS22 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (13572885..13575639, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ribosome 60S biogenesis amino-terminal protein Neighboring gene inositol-1,4,5-trisphosphate 5-phosphatase Neighboring gene fatty acid desaturase A Neighboring gene F-box/RNI-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis ESCRT protein-protein interaction network. Shahriari M, et al. Plant Mol Biol, 2011 May. PMID 21442383
    2. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720
    3. Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery. Richardson LG, et al. Front Plant Sci, 2011. PMID 22639582, Free PMC Article
    4. Exploring the ESCRTing machinery in eukaryotes. Winter V, et al. Trends Plant Sci, 2006 Mar. PMID 16488176, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125593.1
    NM_001125594.1
    NM_001125595.2
    NM_001341834.1
    NM_001341835.1
    NM_118838.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT II complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    EAP30/Vps36 family protein
    NP_001119065.1
    • VPS22; CONTAINS InterPro DOMAIN/s: ESCRT-2 complex, Snf8 (InterPro:IPR016689), EAP30 (InterPro:IPR007286); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001119066.1
    • VPS22; CONTAINS InterPro DOMAIN/s: ESCRT-2 complex, Snf8 (InterPro:IPR016689), EAP30 (InterPro:IPR007286); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001119067.1
    • VPS22; CONTAINS InterPro DOMAIN/s: ESCRT-2 complex, Snf8 (InterPro:IPR016689), EAP30 (InterPro:IPR007286); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_194434.2
    • VPS22; CONTAINS InterPro DOMAIN/s: ESCRT-2 complex, Snf8 (InterPro:IPR016689), EAP30 (InterPro:IPR007286); Has 376 Blast hits to 376 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 138; Plants - 60; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13572885..13575639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125593.1 → NP_001119065.1  EAP30/Vps36 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119065.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5M759, Q9SZ43
      UniProtKB/TrEMBL
      A0A178V291, A0A5S9XW89, A0A654FT70
      Conserved Domains (1) summary
      pfam04157
      Location:5 → 225
      EAP30; EAP30/Vps36 family

    2. NM_001125594.1 → NP_001119066.1  EAP30/Vps36 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119066.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5M759, Q9SZ43
      UniProtKB/TrEMBL
      A0A178V291, A0A5S9XW89, A0A654FT70
      Conserved Domains (1) summary
      pfam04157
      Location:5 → 225
      EAP30; EAP30/Vps36 family

    3. NM_001125595.2 → NP_001119067.1  EAP30/Vps36 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119067.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5M759, Q9SZ43
      UniProtKB/TrEMBL
      A0A178V291, A0A5S9XW89, A0A654FT70
      Conserved Domains (1) summary
      pfam04157
      Location:5 → 225
      EAP30; EAP30/Vps36 family

    4. NM_118838.5 → NP_194434.2  EAP30/Vps36 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194434.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5M759, Q9SZ43
      UniProtKB/TrEMBL
      A0A178V291, A0A5S9XW89, A0A654FT70
      Conserved Domains (1) summary
      pfam04157
      Location:5 → 225
      EAP30; EAP30/Vps36 family

    5. NM_001341834.1 → NP_001328604.1  EAP30/Vps36 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5M759, Q9SZ43
      UniProtKB/TrEMBL
      A0A178V291, A0A5S9XW89, A0A654FT70
      Conserved Domains (1) summary
      pfam04157
      Location:5 → 225
      EAP30; EAP30/Vps36 family

    6. NM_001341835.1 → NP_001328603.1  EAP30/Vps36 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5M759, Q9SZ43
      UniProtKB/TrEMBL
      A0A178V291, A0A5S9XW89, A0A654FT70
      Conserved Domains (1) summary
      pfam04157
      Location:5 → 225
      EAP30; EAP30/Vps36 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5M759.2

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