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    WRKY13 WRKY DNA-binding protein 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830096, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WRKY13
    Official Full Name
    WRKY DNA-binding protein 13
    Primary source
    TAIR:AT4G39410
    Locus tag
    AT4G39410
    See related
    Araport:AT4G39410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13; ATWRKY13; F23K16.40; F23K16_40; WRKY DNA-binding protein 13
    Summary
    member of WRKY Transcription Factor; Group II-c
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    Genomic context

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    See WRKY13 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (18332606..18334893, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene spatacsin carboxy-terminus protein Neighboring gene S-adenosylmethionine carrier 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The WRKY transcription factor, WRKY13, activates PDR8 expression to positively regulate cadmium tolerance in Arabidopsis. Sheng Y, et al. Plant Cell Environ, 2019 Mar. PMID 30311662
    2. WRKY13 acts in stem development in Arabidopsis thaliana. Li W, et al. Plant Sci, 2015 Jul. PMID 26025534
    3. WRKY13 Enhances Cadmium Tolerance by Promoting D-CYSTEINE DESULFHYDRASE and Hydrogen Sulfide Production. Zhang Q, et al. Plant Physiol, 2020 May. PMID 32179630, Free PMC Article
    4. Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Li W, et al. Mol Plant, 2016 Nov 7. PMID 27592586
    5. WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age-mediated flowering. Ma Z, et al. J Integr Plant Biol, 2020 Nov. PMID 32396254

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age-mediated flowering.
      Title: WRKY transcription factors WRKY12 and WRKY13 interact with SPL10 to modulate age-mediated flowering.
    2. WRKY13 Enhances Cadmium Tolerance by Promoting D-CYSTEINE DESULFHYDRASE and Hydrogen Sulfide Production.
      Title: WRKY13 Enhances Cadmium Tolerance by Promoting D-CYSTEINE DESULFHYDRASE and Hydrogen Sulfide Production.
    3. activates PDR8 expression to positively regulate cadmium tolerance
      Title: The WRKY transcription factor, WRKY13, activates PDR8 expression to positively regulate cadmium tolerance in Arabidopsis.
    4. WRKY12 and WRKY13 oppositely modulate flowering time under SD conditions
      Title: Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    5. WRKY13 acts in stem development. Mutants take on a weaker stem phenotype. The number of sclerenchyma cells, stem diameter and the number of vascular bundles were reduced in wrky13 mutants. Lignin-synthesis-related genes were repressed in wrky13 mutants.
      Title: WRKY13 acts in stem development in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120101.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of sclerenchyma cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of lignin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within stress response to cadmium ion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WRKY DNA-binding protein 13
    NP_195651.1
    • WRKY DNA-binding protein 13 (WRKY13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT2G44745.1); Has 3526 Blast hits to 3073 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 3490; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18332606..18334893 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120101.3 → NP_195651.1  WRKY DNA-binding protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195651.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SVB7
      UniProtKB/TrEMBL
      A0A178UV80, A0A384L728, C0SVM6
      Conserved Domains (1) summary
      smart00774
      Location:222 → 279
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SVB7.1

    Gene LinkOut

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